snATACseq analysis with ArchR - GE cluster QC 1.
Cluster that expresses SPI1 and SLC17A7 to remove: C7
Remove clusters that do not have >= 30 cells in at least 2 donors:
Batch corrected cell counts per cluster
| C1 | C10 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
|---|---|---|---|---|---|---|---|---|---|
| 215 | 1130 | 178 | 481 | 922 | 738 | 656 | 579 | 531 | 434 |
Cluster mappings
| RNA | InN-1 | RG-1 | InN-6 | InN-7 | CycPro | InN-3 | RG-3 | RG-2 | RG-3 | InN-1 |
| ATAC | C5 | C7 | C9 | C1 | C8 | C4 | C2 | C10 | C3 | C6 |
Cell counts
UMAP
Cluster that expresses SPI1 and SLC17A7 to remove: C11
Remove clusters that do not have >= 30 cells in at least 2 donors:
Cluster mappings
| RNA | InN-1 | RG-1 | InN-6 | InN-7 | InN-3 | RG-3 | RG-2 | InN-1 | InN-1 |
| ATAC | C8 | C3 | C5 | C1 | C7 | C2 | C4 | C6 | C9 |
Cell counts
UMAP